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Advances in Network Complexity

by Matthias Dehmer Frank Emmert-Streib Abbe Mowshowitz

A well-balanced overview of mathematical approaches to complex systems ranging from applications in chemistry and ecology to basic research questions on network complexity. Matthias Dehmer, Abbe Mowshowitz, and FrankEmmert-Streib, well-known pioneers in the fi eld, have edited this volume with a view to balancing classical and modern approaches to ensure broad coverage of contemporary research problems.The book is a valuable addition to the literature and a must-have for anyone dealing with network compleaity and complexity issues.

Computational Network Analysis with R: Applications in Biology, Medicine and Chemistry

by Matthias Dehmer Frank Emmert-Streib Yongtang Shi

This new title in the well-established "Quantitative Network Biology" series includes innovative and existing methods for analyzing network data in such areas as network biology and chemoinformatics. With its easy-to-follow introduction to the theoretical background and application-oriented chapters, the book demonstrates that R is a powerful language for statistically analyzing networks and for solving such large-scale phenomena as network sampling and bootstrapping. Written by editors and authors with an excellent track record in the field, this is the ultimate reference for R in Network Analysis.

Computational Network Theory

by Matthias Dehmer Frank Emmert-Streib Stefan Pickl

This comprehensive introduction to computational network theory as a branch of network theory builds on the understanding that such networks are a tool to derive or verify hypotheses by applying computational techniques to large scale network data.The highly experienced team of editors and high-profile authors from around the world present and explain a number of methods that are representative of computational network theory, derived from graph theory, as well as computational and statistical techniques. With its coherent structure and homogenous style, this reference is equally suitable for courses on computational networks.

Mathematical Foundations and Applications of Graph Entropy

by Matthias Dehmer Frank Emmert-Streib Xueliang Li Yongtang Shi Zengqiang Chen

This latest addition to the successful Network Biology series presents current methods for determining the entropy of networks, making it the first to cover the recently established Quantitative Graph Theory. An excellent international team of editors and contributors provides an up-to-date outlook for the field, covering a broad range of graph entropy-related concepts and methods. The topics range from analyzing mathematical properties of methods right up to applying them in real-life areas. Filling a gap in the contemporary literature this is an invaluable reference for a number of disciplines, including mathematicians, computer scientists, computational biologists, and structural chemists.

Statistical and Machine Learning Approaches for Network Analysis

by Matthias Dehmer Subhash C. Basak

Explore the multidisciplinary nature of complex networks through machine learning techniquesStatistical and Machine Learning Approaches for Network Analysis provides an accessible framework for structurally analyzing graphs by bringing together known and novel approaches on graph classes and graph measures for classification. By providing different approaches based on experimental data, the book uniquely sets itself apart from the current literature by exploring the application of machine learning techniques to various types of complex networks.Comprised of chapters written by internationally renowned researchers in the field of interdisciplinary network theory, the book presents current and classical methods to analyze networks statistically. Methods from machine learning, data mining, and information theory are strongly emphasized throughout. Real data sets are used to showcase the discussed methods and topics, which include:A survey of computational approaches to reconstruct and partition biological networksAn introduction to complex networks--measures, statistical properties, and modelsModeling for evolving biological networksThe structure of an evolving random bipartite graphDensity-based enumeration in structured dataHyponym extraction employing a weighted graph kernelStatistical and Machine Learning Approaches for Network Analysis is an excellent supplemental text for graduate-level, cross-disciplinary courses in applied discrete mathematics, bioinformatics, pattern recognition, and computer science. The book is also a valuable reference for researchers and practitioners in the fields of applied discrete mathematics, machine learning, data mining, and biostatistics.

Statistical Diagnostics for Cancer: Analyzing High-Dimensional Data

by Matthias Dehmer Frank Emmert-Streib

This ready reference discusses different methods for statistically analyzing and validating data created with high-throughput methods. As opposed to other titles, this book focusses on systems approaches, meaning that no single gene or protein forms the basis of the analysis but rather a more or less complex biological network. From a methodological point of view, the well balanced contributions describe a variety of modern supervised and unsupervised statistical methods applied to various large-scale datasets from genomics and genetics experiments. Furthermore, since the availability of sufficient computer power in recent years has shifted attention from parametric to nonparametric methods, the methods presented here make use of such computer-intensive approaches as Bootstrap, Markov Chain Monte Carlo or general resampling methods. Finally, due to the large amount of information available in public databases, a chapter on Bayesian methods is included, which also provides a systematic means to integrate this information. A welcome guide for mathematicians and the medical and basic research communities.

Towards an Information Theory of Complex Networks

by Alexander Mehler Matthias Dehmer Frank Emmert-Streib

For over a decade, complex networks have steadily grown as an important tool across a broad array of academic disciplines, with applications ranging from physics to social media. A tightly organized collection of carefully-selected papers on the subject, Towards an Information Theory of Complex Networks: Statistical Methods and Applications presents theoretical and practical results about information-theoretic and statistical models of complex networks in the natural sciences and humanities. The book's major goal is to advocate and promote a combination of graph-theoretic, information-theoretic, and statistical methods as a way to better understand and characterize real-world networks. This volume is the first to present a self-contained, comprehensive overview of information-theoretic models of complex networks with an emphasis on applications. As such, it marks a first step toward establishing advanced statistical information theory as a unified theoretical basis of complex networks for all scientific disciplines and can serve as a valuable resource for a diverse audience of advanced students and professional scientists. While it is primarily intended as a reference for research, the book could also be a useful supplemental graduate text in courses related to information science, graph theory, machine learning, and computational biology, among others.

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