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Microarchaeology: Beyond the Visible Archaeological Record
by Stephen WeinerThe archaeological record is a combination of what is seen by eye, as well as the microscopic record revealed with the help of instrumentation. The information embedded in the microscopic record can significantly add to our understanding of past human behaviour, provided this information has not been altered by the passage of time. Microarchaeology seeks to understand the microscopic record in terms of the type of information embedded in this record, the materials in which this information resides, and the conditions under which a reliable signal can be extracted. This book highlights the concepts needed to extract information from the microscopic record. Intended for all archaeologists and archaeological scientists, it will be of particular interest to students who have some background in the natural sciences as well as archaeology.
Microarray Bioinformatics (Methods in Molecular Biology #1986)
by Amparo Alonso-Betanzos Verónica Bolón-CanedoThis book provides a comprehensive, interdisciplinary collection of the main, up-to-date methods, tools, and techniques for microarray data analysis, covering the necessary steps for the acquisition of the data, its preprocessing, and its posterior analysis. Featuring perspectives from biology, computer science, and statistics, the volume explores machine learning methods such as clustering, feature selection, classification, data normalization, and missing value imputation, as well as the statistical analysis of the data and the most popular computer tools to analyze microarray data. Written for the highly successful Methods in Molecular Biology series, chapters include the kind of detailed implementation advice that will aid researchers in getting successful results. Cutting-edge and authoritative, Microarray Bioinformatics serves as an ideal guide for researchers and graduate students in bioinformatics, with basic knowledge in biology and computer science, and with a view to work with microarray datasets.
Microarray Data Analysis
by Michael J. KorenbergIn this new volume, renowned authors contribute fascinating, cutting-edge insights into microarray data analysis. Information on an array of topics is included in this innovative book including in-depth insights into presentations of genomic signal processing. Also detailed is the use of tiling arrays for large genomes analysis. The protocols follow the successful Methods in Molecular BiologyTM series format, offering step-by-step instructions, an introduction outlining the principles behind the technique, lists of the necessary equipment and reagents, and tips on troubleshooting and avoiding pitfalls.
Microarray Data Analysis
by Pietro Hiram GuzziThis volume covers a large area, from the description of methodologies for data analysis to the real application. Chapters focus on methodologies for preprocessing of microarray data, a survey of miRNA Data analysis, Cloud-based approaches, application of data mining techniques for data analysis, biclustering to query different datasets, web-based tool to analyze the evolution of miRNA clusters, application of biclustering to mine patterns of co-regulated genes ontologies, microarray and proteomic Data, Gene Regulatory Network Inference, Gene Regulatory Network methods, analysis of Mouse data for metabolomics studies, analysis of microRNA data in Multiple Myeloma, microarray data analysis in Gliobastomas, and microRNA data in Cardiogenesis. Written for the Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Microarray Data Analysis: Methods and Applications, Second Edition aims to ensure successful results in the further study of this vital field.
Microarray Data Analysis (Methods in Molecular Biology #2401)
by Giuseppe AgapitoThis meticulous book explores the leading methodologies, techniques, and tools for microarray data analysis, given the difficulty of harnessing the enormous amount of data. The book includes examples and code in R, requiring only an introductory computer science understanding, and the structure and the presentation of the chapters make it suitable for use in bioinformatics courses. Written for the highly successful Methods in Molecular Biology series, chapters include the kind of key detail and expert implementation advice that ensures successful results and reproducibility. Authoritative and practical, Microarray Data Analysis is an ideal guide for students or researchers who need to learn the main research topics and practitioners who continue to work with microarray datasets.
Microarray Detection and Characterization of Bacterial Foodborne Pathogens
by Mónica Aguado-Urda Guillermo López-Campos Joaquín V. Martínez-Suárez Victoria López-AlonsoThis is a review of recent advances on the use of DNA microarray for diagnosing foodborne pathogens. Rapid detection and characterization of foodborne pathogens is critical for food safety. Many relevant technologies have been intensively developed to date. DNA microarray technology offers a new way to food safety involving pathogen detection and characterization. DNA microarray can be used for detection and characterization of pathogens by analyzing hybridization patterns between capture probes and nucleic acids isolated from food samples or bacteria. It allows more rapid, accurate, and cost-effective detection of pathogens compared with traditional approaches of cultivation or immuno-assays. The application of DNA microarrays to different foodborne bacteria, such as Campylobacter, Salmonella, Listeria monocytogenes, or Shiga toxin producing Escherichia coli, will improve their rapid identification and characterization of their genetic traits (e.g., antimicrobial resistance, virulence). As bacterial foodborne diseases are posing more serious threats to public healthcare, development of rapid and accurate methods for pathogen detection and characterization is critical to their proper control at the earliest time.
Microarray Image Analysis: An Algorithmic Approach (Chapman & Hall/CRC Computer Science & Data Analysis)
by Karl Fraser Zidong Wang Xiaohui LiuTo harness the high-throughput potential of DNA microarray technology, it is crucial that the analysis stages of the process are decoupled from the requirements of operator assistance. Microarray Image Analysis: An Algorithmic Approach presents an automatic system for microarray image processing to make this decoupling a reality. The proposed syste
Microarray Image and Data Analysis: Theory and Practice (Digital Imaging and Computer Vision #8)
by Luis RuedaMicroarray Image and Data Analysis: Theory and Practice is a compilation of the latest and greatest microarray image and data analysis methods from the multidisciplinary international research community. Delivering a detailed discussion of the biological aspects and applications of microarrays, the book: Describes the key stages of image processing, gridding, segmentation, compression, quantification, and normalization Features cutting-edge approaches to clustering, biclustering, and the reconstruction of regulatory networks Covers different types of microarrays such as DNA, protein, tissue, and low- and high-density oligonucleotide arrays Examines the current state of various microarray technologies, including their availability and affordability Explains how data generated by microarray experiments are analyzed to obtain meaningful biological conclusions An essential reference for academia and industry, Microarray Image and Data Analysis: Theory and Practice provides readers with valuable tools and techniques that extend to a wide range of biological studies and microarray platforms.
Microarray Innovations: Technology and Experimentation
by Gary HardimanIn recent years, high-density DNA microarrays have revolutionized biomedical research and drug discovery efforts by the pharmaceutical industry. Their efficacy in identifying and prioritizing drug targets based on their ability to confirm a large number of gene expression measurements in parallel has become a key element in drug discovery. Microarr
Microarray Methods and Protocols
by Robert S. MatsonA Step-by-Step Guide to Present and Future Uses of Microarray TechnologyMicroarray technology continues to evolve, taking on a variety of forms. From the spotting of cDNA and the in situ synthesis of oligonucleotide arrays now come microarrays comprising proteins, carbohydrates, drugs, tissues, and cells. With contributions from microarray experts
Microarray Technology
by Lin Wang Paul C. H. Li Abootaleb SedighiThis volume provides updates of this established field in both methods and applications, as well as advances in applications of the microarray method to biomarkers such as DNAs, RNAs, proteins, glycans and whole cells. Written for the Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Microarray Technology: Methods and Applications aims to ensure successful results in the further study of this vital field.
Microarray Technology Through Applications
by Francesco FalcianiMicroarray Technology Through Applications provides the reader with an understanding, from an applications perspective, of the diverse range of concepts required to master the experimental and data analysis aspects of microarray technology. The first chapter is a concise introduction to the technology and provides the theoretical background required to understand the subsequent sections. The following chapters are a series of case studies representative of the most general and important applications of microarray technology, including CGH, analysis of gene expression, SNP arrays and protein arrays. The case studies are written by experts in the field and describe prototypic projects, indicating how to generalize the approach to similar studies. There are detailed step-by-step protocols describing the specific experimental and data analysis protocols mentioned in the case study section. There is also information on printing glass DNA microarray slides and data interpretation. Colour figures and data sets are provided on the website at http://www.garlandscience.com/9780415378536
Microarrays
by Piotr Grodzinsky Robin Liu Kilian DillCombinatorial chemistry is used to find materials that form sensor microarrays. This book discusses the fundamentals, and then proceeds to the many applications of microarrays, from measuring gene expression (DNA microarrays) to protein-protein interactions, peptide chemistry, carbodhydrate chemistry, electrochemical detection, and microfluidics.
Microarrays and Microplates: Applications in Biomedical Sciences (Advanced Methods Ser.)
by S. Ye I.N.M. DayThe 'Advanced Methods' series is intended for advanced undergraduates, postgraduates and established research scientists. Titles in the series are designed to cover current important areas of research in life sciences, and include both theoretical background and detailed protocols. The aim is to give researchers sufficient theory, supported by references, to take the given protocols and adapt them to their particular experimental systems.Microarrays and Microplates title looks at the new microarray and microplate-based technologies which facilitate large-scale analysis of DNA sequence variants, mRNA molecules and proteins. The book provides a review of the various methodologies being used to identify genetic variants and gene regulation and guides readers through both the application of these methodologies and experimental procedures.
Microarrays and Transcription Networks
by M. Francis Shannon Sudha RaoWhile every cell of an organism has an identical genomic content, extremely complex networks exist to tailor the genomic output to the needs of that cell. This program of gene expression is different for every cell type and stage of development. In addition, the cell can respond to its environment by modulating its gene expression program in a fairly dramatic manner. For many decades gene transcription has been investigated in systems from bacteria to mammalian cells and along the way many landmark findings have set new paradigms that often apply across wide evolutionary distances. Studying individual genes, however, especially in mammalian systems has been a painstaking business and although we know the transcription activators and other complexes that control specific genes in minute detail, generalizing these findings has often proven to be difficult. It has become clear that transcription factors do not operate alone but form complex networks in the cell. If one component of this complexity is disturbed then there are repercussions across the entire network, but it has been impossible to study these networks until very recently. The advent of microarray technology within the last decade has revolutionized how we study gene transcription. There are several types of array technology that essentially screen for relative mRNA levels for many thousands of genes at once. We do not focus here on the technology as this has become routine and is available to many researchers. Microarray technology has given us the ability to measure the entire gene expression program of a cell in a single experiment and compare it to other cells thus allowing a global view of cell behaviour at the level of gene transcription. Expression profiling, as this endeavour has become known, is now a relatively simple undertaking and hundreds, probably thousands of papers have been published demonstrating the power of this technology. Expression profiling has been applied to many diverse biological problems and is also being developed as a method for disease diagnosis especially in the cancer classification field. There are constant improvements or modified uses of the technology that are allowing more and more high throughput experiments to be carried out.
Microarrays for an Integrative Genomics
by Isaac S. Kohane Alvin Kho Atul J. ButteFunctional genomics--the deconstruction of the genome to determine the biological function of genes and gene interactions--is one of the most fruitful new areas of biology. The growing use of DNA microarrays allows researchers to assess the expression of tens of thousands of genes at a time. This quantitative change has led to qualitative progress in our ability to understand regulatory processes at the cellular level. This book provides a systematic introduction to the use of DNA microarrays as an investigative tool for functional genomics. The presentation is appropriate for readers from biology or bioinformatics. After presenting a framework for the design of microarray-driven functional genomics experiments, the book discusses the foundations for analyzing microarray data sets, genomic data-mining, the creation of standardized nomenclature and data models, clinical applications of functional genomics research, and the future of functional genomics.
Microarrays in Diagnostics and Biomarker Development
by Bertrand JordanMicroarray technology has made strong progress over the past decade, and there have also been significant changes in application areas, from nucleic acids to proteomics and from research to clinical applications. This book provides a comprehensive overview of microarrays in diagnostics and biomarker development, covering DNA, peptide, protein and tissue arrays. The focus is on entities that are in actual clinical use, or quite close, and on recent developments, such as peptide and aptamer arrays. A further topic is the miniaturisation towards "nanoarrays", which is expected to have great potential in clinical applications. Relevant issues of bioinformatics and statistical analysis of array data are discussed in detail, as well as the barriers to the commercialisation of array-based tests and the vexing IP issues involved. Thus, the book should be very useful tor active array users as well as to newcomers seeking to make the best choice between different technologies.
Microarrays in Diagnostics and Biomarker Development: Current and Future Applications
by Bertrand JordanMicroarray technology has made strong progress over the past decade, and there have also been significant changes in application areas, from nucleic acids to proteomics and from research to clinical applications. This book provides a comprehensive overview of microarrays in diagnostics and biomarker development, covering DNA, peptide, protein and tissue arrays. The focus is on entities that are in actual clinical use, or quite close, and on recent developments, such as peptide and aptamer arrays. A further topic is the miniaturisation towards “nanoarrays”, which is expected to have great potential in clinical applications. Relevant issues of bioinformatics and statistical analysis of array data are discussed in detail, as well as the barriers to the commercialisation of array-based tests and the vexing IP issues involved. Thus, the book should be very useful tor active array users as well as to newcomers seeking to make the best choice between different technologies.
Microarrays, Volume 2, Applications and Data Analysis
by Jang B. RampalMicroarray Technology, Volumes 1 and 2, present information in designing and fabricating arrays and binding studies with biological analytes. This is done while providing the reader with a broad description of microarray technology tools and their potential applications. The first volume deals with methods and protocols for the preparation of microarrays. The second volume details applications and data analysis, which is important in analyzing the enormous data coming out of microarray experiments. <P><P>Microarray Technology, Volumes 1 and 2, provide ample information to all levels of scientists from novice to those intimately familiar with array technology.
Microarrays, Volume I: Synthesis Methods
by Jang B. RampalMicroarray Technology, Volumes 1 and 2, present information in designing and fabricating arrays and binding studies with biological analytes. This is done while providing the reader with a broad description of microarray technology tools and their potential applications. The first volume deals with methods and protocols for the preparation of microarrays. The second volume details applications and data analysis, which is important in analyzing the enormous data coming out of microarray experiments. <P><P>Microarray Technology, Volumes 1 and 2, provide ample information to all levels of scientists from novice to those intimately familiar with array technology.
Microbe (ASM Books)
by Michele Swanson Moselio Schaechter Gemma Reguera Frederick C. NeidhardtBrings the excitement, breadth, and power of the modern microbial sciences to the next generation of students and scientists. This new edition of Microbeis an eloquent and highly readable introduction to microbiology that will engage and excite science majors and pre-health professionals. The authors, all prominent scientists, have carefully crafted this lively narrative to bring key microbiology concepts to life and promote a lifelong passion for the microbial sciences. Far more than a comprehensive reference book, Microbeis replete with case studies, ranging from sauerkraut fermentation to the cholera outbreak in Haiti, that illustrate the impact of key microbiology concepts on real-world scenarios. To further engage students and deepen their understanding of both the principles and practice of science, each chapter includes multiple active learning exercises that encourage students to demonstrate their understanding and application of concepts, as well as video, spoken, and written resources. Questions are posed throughout the book to introduce the next key concept and to prompt students to actively participate in the learning experience. An equally valuable tool for instructors who teach a traditional lecture format and those who emphasize active learning in their classroom, Microbeintegrates key concepts, learning outcomes, and fundamental statements directly from the ASM Recommended Curriculum Guidelines for Undergraduate Microbiology Education.
Microbe (Asm Bks.)
by Michele S. Swanson Elizabeth A. Joyce Rachel E. A. HorakThis third edition of the bestselling Microbe textbook is an eloquent and highly readable introduction to microbiology that will engage and excite science majors and pre-health professionals. The authors have carefully crafted a lively narrative with stunning, detailed illustrations to bring key concepts to life and promote a lifelong passion for the microbial sciences. Microbe is replete with case studies, ranging from a MRSA (methicillin-resistant Staphylococcus aureus) outbreak in an NFL locker room to the search for life outside of Earth, that illustrate relevant microbiology concepts in real-world scenarios. To further engage students and deepen their understanding of both the principles and practice of science, each chapter includes activities that encourage students to demonstrate and apply their knowledge of the topics presented. Questions are posed throughout each chapter to introduce important subjects and to prompt students to actively participate in the learning experience. This new edition also features highlight boxes exploring the varied roles and applications of microbes at work in our world as well as profiles of the diverse array of individuals who work in and adjacent to the field of microbiology. An equally valuable tool for instructors of all classroom modalities, Microbe integrates key concepts, learning outcomes, and fundamental statements directly from the ASM Curriculum Guidelines for Undergraduate Microbiology. The new edition also provides robust instructor materials, including slides with figures and tables from the text, access to more than 250 peer-reviewed questions for microbiology education, and an instructors’ manual featuring answers for end-of-chapter questions as well as supplemental exercises and resources to challenge students to dig deeper into their understanding of the material.
Microbe Hunters: The Classic Book on the Major Discoveries of the Microscopic World
by Paul de KruifAn international bestseller, translated into 18 languages, Paul de Kruif's classic account of the first scientists to see and learn about the microscopic world continues to fascinate audiences. This is a timeless dramatization of the scientists, bacteriologists, doctors, and medical technicians who discovered the microbes and invented the vaccines to counter them. De Kruif writes about how seemingly simple but really fundamental discoveries of science—for instance, how a microbe was first viewed in a clear drop of rain water, and when, for the first time, Louis Pasteur discovered that a simple vaccine could save a man from the ravages of rabies by attacking the microbes that cause it. "It manages to delight, and frequently to entrance, old and new readers [and] continues to engage our hearts and minds today with an indescribable brand of affectionate sympathy." –– F. Gonzalez-Crussi, from the Introduction.
Microbe Hunting: Unveiling the Secrets of Microorganisms through Assessment, Sequencing, and Bioinformatics Analysis
by Bhagwan Narayan Rekadwad"Microbe Hunting: Unveiling the Secrets of Microorganisms through Assessment, Sequencing, and Bioinformatics Analysis" embarks on a captivating expedition into the unseen world of microorganisms. This insightful journey navigates the intricate realms of microbial diversity, unwrapping the significance of ecological roles and technological advancements. Through the lens of assessment techniques, the book unveils the art of sample preparation and the transformative power of sequencing technologies, shedding light on the uncharted territories of bioinformatics analysis. From decoding taxonomic landscapes to unearthing functional treasures, this book traverses metagenomics and its benefits for human. With ethical considerations and glimpses into the future, the voyage culminates, offering a profound understanding of the microbial universe and its boundless potential.
Microbe-Assisted Phytoremediation of Environmental Pollutants: Recent Advances and Challenges
by Vineet Kumar Gaurav SaxenaMicrobe-Assisted Phytoremediation of Environmental Pollutants: Recent Advances and Challenges provides comprehensive information on the principles and practical knowledge of microbe-assisted phytoremediation of organic and inorganic pollutants for environmental safety. This book describes the physiological, biochemical, microbiological, and molecular basis of microbe-assisted phytoremediation and contains many relevant topics to fill the gaps in developing an understanding of microbe-assisted phytoremediation of environmental pollutants. The book provides state-of-the-art knowledge on fundamental, practical, and purposeful utilization of plant-associated bacteria (plant growth-promoting rhizobacteria [PGPR] and endophytes) and arbuscular mycorrhizal fungi for plant-growth promotion and enhanced phytoremediation of environmental pollutants in the contaminated matrix. Features: Provides a state-of-the-art overview of microbe-assisted phytoremediation Emphasizes the roles of PGPR, endophytes, and mycorrhizal fungi in assisted phytoremediation Elucidates biochemical and molecular mechanisms of microbe-assisted phytoremediation Details field studies and success stories of microbe-assisted phytoremediation Explores advances, challenges, and future directions in microbe-assisted phytoremediation The book serves as a valuable resource for researchers, ecotoxicologists, environmental scientists and engineers, environmental microbiologists and biotechnologists, environmental health and risk scientists, environmental science managers and administrators, remediation practitioners, environmental policymakers, and students at the postgraduate and doctoral levels in the relevant fields who wish to work on microbe-assisted phytoremediation of pollutants for environmental safety and sustainability.